Bontempi's research on predictive modelling for life science, bioinformatics and biomedicine
Papers
- Loi, Sherene; Haibe-Kains, Benjamin; Desmedt, Christine; Wirapati, Pratyaksha; Lallemand, Françoise; Tutt, Andrew M; Gillet, Cheryl; Ellis, Paul; Ryder, Kenneth; Reid, James F; "Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen", BMC genomics,9,1,239,2008, BioMed Central London
- Haibe-Kains, Benjamin; Desmedt, Christine; Loi, Sherene; Culhane, Aedin C; Bontempi, Gianluca; Quackenbush, John; Sotiriou, Christos; ",A three-gene model to robustly identify breast cancer molecular subtypes, Journal of the National Cancer Institute,104,4,311-325,2012, Oxford University Press
- Haibe-Kains, Benjamin; Desmedt, Christine; Sotiriou, Christos; Bontempi, Gianluca; "A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all?", Bioinformatics, 24, 19, 2200-2208, 2008, Oxford University Press
- Haibe-Kains, Benjamin; Desmedt, Christine; Piette, Fanny; Buyse, Marc; Cardoso, Fatima; Van't Veer, Laura; Piccart, Martine; Bontempi, Gianluca; Sotiriou, Christos; "Comparison of prognostic gene expression signatures for breast cancer", BMC genomics, 9, 1, 394,2008, BioMed Central London
- Meyer, Patrick E; Bontempi, Gianluca; "On the use of variable complementarity for feature selection in cancer classification", Workshops on applications of evolutionary computation, 91-102,2006, Springer Berlin Heidelberg Berlin, Heidelberg
- Haibe-Kains, Benjamin; Desmedt, Christine; Rothé, Françoise; Piccart, Martine; Sotiriou, Christos; Bontempi, Gianluca; "A fuzzy gene expression-based computational approach improves breast cancer prognostication", Genome Biology, 11, 2, R18,2010, BioMed Central London
- Lopes, Miguel; Kutlu, Burak; Miani, Michela; Bang-Berthelsen, Claus H; Størling, Joachim; Pociot, Flemming; Goodman, Nathan; Hood, Lee; Welsh, Nils; Bontempi, Gianluca; "Temporal profiling of cytokine-induced genes in pancreatic β-cells by meta-analysis and network inference", Genomics, 103, 4, 264-275, 2014, Academic Press
- Colaprico, Antonio; Silva, Tiago C; Olsen, Catharina; Garofano, Luciano; Cava, Claudia; Garolini, Davide; Sabedot, Thais S; Malta, Tathiane M; Pagnotta, Stefano M; Castiglioni, Isabella; "TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data", Nucleic acids research, 44, 8, e71-e71, 2016, Oxford University Press
- Van Grembergen, Olivier; Bizet, Martin; de Bony, Eric J; Calonne, Emilie; Putmans, Pascale; Brohée, Sylvain; Olsen, Catharina; Guo, Mingzhou; Bontempi, Gianluca; Sotiriou, Christos; "Portraying breast cancers with long noncoding RNAs", Science advances, 2, 9, e1600220,2016, American Association for the Advancement of Science
- Jeschke, Jana; Bizet, Martin; Desmedt, Christine; Calonne, Emilie; Dedeurwaerder, Sarah; Garaud, Soizic; Koch, Alexander; Larsimont, Denis; Salgado, Roberto; Van den Eynden, Gert; "DNA methylation–based immune response signature improves patient diagnosis in multiple cancers", The Journal of clinical investigation, 127, 8, 3090-3102, 2017, American Society for Clinical Investigation
- Xu, Taosheng; Le, Thuc Duy; Liu, Lin; Su, Ning; Wang, Rujing; Sun, Bingyu; Colaprico, Antonio; Bontempi, Gianluca; Li, Jiuyong; "CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization", Bioinformatics,33,19,3131-3133,2017,Oxford University Press
- Colaprico, Antonio; Olsen, Catharina; Bailey, Matthew H; Odom, Gabriel J; Terkelsen, Thilde; Silva, Tiago C; Olsen, André V; Cantini, Laura; Zinovyev, Andrei; Barillot, Emmanuel; "Interpreting pathways to discover cancer driver genes with Moonlight", Nature Communications, 11,1,69,2020, Nature Publishing Group UK London